IL_6FTI_165

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

6FTI|1|u|G|5049

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_165 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1692

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6FTI|1|u|G|5000
6FTI|1|u|U|5001
6FTI|1|u|U|5002
*
6FTI|1|u|G|5045
6FTI|1|u|U|5046
6FTI|1|u|C|5047
6FTI|1|u|A|5048
6FTI|1|u|G|5049
6FTI|1|u|C|5050

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain d

eL31