IL_6FTJ_040

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGCC*GGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_040 not in the Motif Atlas

Geometric match to IL_4V88_432

Geometric discrepancy: 0.3908

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6FTJ|1|u|G|1074
6FTJ|1|u|G|1075
6FTJ|1|u|C|1076
6FTJ|1|u|C|1077
*
6FTJ|1|u|G|1233
6FTJ|1|u|G|1234
6FTJ|1|u|G|1235
6FTJ|1|u|C|1236

Current chains

Chain u

28S rRNA

Nearby chains

Chain C

Ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

Ul30