IL_6FTJ_060
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUUC*GAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_060 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.2782
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6FTJ|1|u|U|1671
6FTJ|1|u|U|1672
6FTJ|1|u|U|1673
6FTJ|1|u|C|1674
*
6FTJ|1|u|G|1681
6FTJ|1|u|A|1682
6FTJ|1|u|U|1683
6FTJ|1|u|A|1684
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain Q
- uL14
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- 60S ribosomal protein L29
Coloring options: