IL_6FTJ_088

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_088 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0909

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6FTJ|1|u|G|2358
6FTJ|1|u|U|2359
6FTJ|1|u|A|2360
6FTJ|1|u|G|2361
6FTJ|1|u|U|2362
6FTJ|1|u|A|2363
6FTJ|1|u|G|2364
*
6FTJ|1|u|C|3858
6FTJ|1|u|G|3859
6FTJ|1|u|A|3860
6FTJ|1|u|A|3861
6FTJ|1|u|A|3862
6FTJ|1|u|C|3863

Current chains

Chain u

28S rRNA

Nearby chains

Chain C

Ribosomal protein L4

Chain P

uL22