IL_6FTJ_099
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 6FTJ|1|u|U|2661, 6FTJ|1|u|A|2674
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_099 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1595
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6FTJ|1|u|U|2656
6FTJ|1|u|G|2657
6FTJ|1|u|G|2658
6FTJ|1|u|A|2659
6FTJ|1|u|A|2660
6FTJ|1|u|U|2661
6FTJ|1|u|G|2662
*
6FTJ|1|u|C|2672
6FTJ|1|u|G|2673
6FTJ|1|u|A|2674
6FTJ|1|u|G|2675
6FTJ|1|u|A|2676
6FTJ|1|u|G|2677
6FTJ|1|u|A|2678
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain R
- eL19
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- Ribosomal protein L37a
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