IL_6FXC_026

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCC*GAGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_026 not in the Motif Atlas

Geometric match to IL_8P9A_292

Geometric discrepancy: 0.3946

The information below is about IL_8P9A_292

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

6FXC|1|AA|G|881
6FXC|1|AA|C|882
6FXC|1|AA|C|883
*
6FXC|1|AA|G|984
6FXC|1|AA|A|985
6FXC|1|AA|G|986
6FXC|1|AA|U|987

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L35

Chain AJ

50S ribosomal protein L15