IL_6FXC_027

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGAUG*UUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_027 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.195

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06300.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6FXC|1|AA|U|889
6FXC|1|AA|G|890
6FXC|1|AA|A|891
6FXC|1|AA|U|892
6FXC|1|AA|G|893
*
6FXC|1|AA|U|975
6FXC|1|AA|U|976
6FXC|1|AA|A|977
6FXC|1|AA|A|978

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L30