IL_6FXC_041

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6FXC|1|AA|G|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_041 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.103

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6FXC|1|AA|C|1235
6FXC|1|AA|G|1236
6FXC|1|AA|U|1237
*
6FXC|1|AA|A|1285
6FXC|1|AA|G|1286
6FXC|1|AA|U|1287
6FXC|1|AA|G|1288

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AJ

50S ribosomal protein L15

Chain AO

50S ribosomal protein L20