IL_6FXC_046

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

6FXC|1|AA|G|1369

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_046 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.0836

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6FXC|1|AA|G|1356
6FXC|1|AA|G|1357
6FXC|1|AA|A|1358
6FXC|1|AA|A|1359
6FXC|1|AA|G|1360
*
6FXC|1|AA|C|1368
6FXC|1|AA|G|1369
6FXC|1|AA|C|1370

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AQ

50S ribosomal protein L22

Chain AR

50S ribosomal protein L23