IL_6FXC_061

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

6FXC|1|AA|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_061 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.0989

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6FXC|1|AA|A|1713
6FXC|1|AA|C|1714
6FXC|1|AA|U|1715
6FXC|1|AA|C|1716
6FXC|1|AA|G|1717
6FXC|1|AA|G|1718
*
6FXC|1|AA|C|2017
6FXC|1|AA|U|2018
6FXC|1|AA|G|2019
6FXC|1|AA|U|2020

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AI

50S ribosomal protein L14