IL_6FXC_073

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

6FXC|1|AA|C|2082, 6FXC|1|AA|U|2640

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_073 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.1245

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

6FXC|1|AA|A|2081
6FXC|1|AA|C|2082
6FXC|1|AA|G|2083
*
6FXC|1|AA|C|2639
6FXC|1|AA|U|2640
6FXC|1|AA|A|2641
6FXC|1|AA|U|2642

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AQ

50S ribosomal protein L22

Chain AZ

50S ribosomal protein L32