IL_6FXC_094

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_094 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.1091

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6FXC|1|AA|U|2679
6FXC|1|AA|U|2680
6FXC|1|AA|A|2681
6FXC|1|AA|G|2682
6FXC|1|AA|U|2683
6FXC|1|AA|A|2684
6FXC|1|AA|C|2685
*
6FXC|1|AA|G|2690
6FXC|1|AA|G|2691
6FXC|1|AA|A|2692
6FXC|1|AA|C|2693
6FXC|1|AA|C|2694
6FXC|1|AA|G|2695

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AG

50S ribosomal protein L6