IL_6FXC_105
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FXC_105 not in the Motif Atlas
- Homologous match to IL_7RQB_114
- Geometric discrepancy: 0.1444
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6FXC|1|AB|U|32
6FXC|1|AB|U|33
6FXC|1|AB|C|34
6FXC|1|AB|C|35
6FXC|1|AB|C|36
*
6FXC|1|AB|G|42
6FXC|1|AB|A|43
6FXC|1|AB|A|44
6FXC|1|AB|C|45
6FXC|1|AB|A|46
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AF
- 50S ribosomal protein L5
- Chain AM
- 50S ribosomal protein L18
- Chain AY
- 50S ribosomal protein L31 type B
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