IL_6FXC_142

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6FXC|1|Aa|A|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_142 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.1129

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6FXC|1|Aa|G|931
6FXC|1|Aa|A|932
*
6FXC|1|Aa|U|1403
6FXC|1|Aa|A|1404
6FXC|1|Aa|C|1405

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ae

30S ribosomal protein S5