IL_6FXC_155

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAAAC*GUCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_155 not in the Motif Atlas

Geometric match to IL_1L9A_008

Geometric discrepancy: 0.3342

The information below is about IL_1L9A_008

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6FXC|1|Aa|C|1269
6FXC|1|Aa|G|1270
6FXC|1|Aa|A|1271
6FXC|1|Aa|A|1272
6FXC|1|Aa|A|1273
6FXC|1|Aa|C|1274
*
6FXC|1|Aa|G|1281
6FXC|1|Aa|U|1282
6FXC|1|Aa|C|1283
6FXC|1|Aa|A|1284
6FXC|1|Aa|A|1285
6FXC|1|Aa|G|1286

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain As

30S ribosomal protein S19