IL_6FXC_163

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UAAC*GGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_163 not in the Motif Atlas

Geometric match to IL_5LQO_002

Geometric discrepancy: 0.18

The information below is about IL_5LQO_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6FXC|1|Aa|U|1434
6FXC|1|Aa|A|1435
6FXC|1|Aa|A|1436
6FXC|1|Aa|C|1437
*
6FXC|1|Aa|G|1484
6FXC|1|Aa|G|1485
6FXC|1|Aa|G|1486
6FXC|1|Aa|A|1487

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AI

50S ribosomal protein L14

Chain Al

30S ribosomal protein S12