IL_6FXC_171
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GGGGAG*CUUUGAUCC
- Length
- 15 nucleotides
- Bulged bases
- 6FXC|1|BA|U|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FXC_171 not in the Motif Atlas
- Geometric match to IL_4LFB_031
- Geometric discrepancy: 0.2235
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6FXC|1|BA|G|80
6FXC|1|BA|G|81
6FXC|1|BA|G|82
6FXC|1|BA|G|83
6FXC|1|BA|A|84
6FXC|1|BA|G|85
*
6FXC|1|BA|C|97
6FXC|1|BA|U|98
6FXC|1|BA|U|99
6FXC|1|BA|U|100
6FXC|1|BA|G|101
6FXC|1|BA|A|102
6FXC|1|BA|U|103
6FXC|1|BA|C|104
6FXC|1|BA|C|105
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BS
- 50S ribosomal protein L24
- Chain BW
- 50S ribosomal protein L29
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