IL_6FXC_175

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_175 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.0751

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6FXC|1|BA|G|190
6FXC|1|BA|A|191
6FXC|1|BA|G|192
6FXC|1|BA|A|193
6FXC|1|BA|A|194
6FXC|1|BA|C|195
6FXC|1|BA|U|196
6FXC|1|BA|G|197
*
6FXC|1|BA|C|204
6FXC|1|BA|U|205
6FXC|1|BA|U|206
6FXC|1|BA|A|207
6FXC|1|BA|G|208
6FXC|1|BA|U|209
6FXC|1|BA|A|210
6FXC|1|BA|C|211
6FXC|1|BA|C|212

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BJ

50S ribosomal protein L15

Chain BV

50S ribosomal protein L28