IL_6FXC_192

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GCG*CAAUC

Length

8 nucleotides

Bulged bases

6FXC|1|BA|C|821, 6FXC|1|BA|A|833, 6FXC|1|BA|A|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_192 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0863

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6FXC|1|BA|G|820
6FXC|1|BA|C|821
6FXC|1|BA|G|822
*
6FXC|1|BA|C|832
6FXC|1|BA|A|833
6FXC|1|BA|A|834
6FXC|1|BA|U|835
6FXC|1|BA|C|836

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2

Chain BQ

50S ribosomal protein L22