IL_6FXC_202

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UCCCAAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_202 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1301

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6FXC|1|BA|U|1048
6FXC|1|BA|C|1049
6FXC|1|BA|C|1050
6FXC|1|BA|C|1051
6FXC|1|BA|A|1052
6FXC|1|BA|A|1053
6FXC|1|BA|A|1054
6FXC|1|BA|A|1055
*
6FXC|1|BA|U|1194
6FXC|1|BA|A|1195

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L13

Chain BO

50S ribosomal protein L20