IL_6FXC_206

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_206 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3475

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6FXC|1|BA|G|1075
6FXC|1|BA|A|1076
6FXC|1|BA|U|1077
6FXC|1|BA|G|1078
*
6FXC|1|BA|C|1165
6FXC|1|BA|G|1166
6FXC|1|BA|C|1167

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BK

50S ribosomal protein L16