IL_6FXC_217

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

6FXC|1|BA|U|1464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_217 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2966

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6FXC|1|BA|C|1461
6FXC|1|BA|G|1462
6FXC|1|BA|A|1463
6FXC|1|BA|U|1464
6FXC|1|BA|G|1465
*
6FXC|1|BA|C|1624
6FXC|1|BA|U|1625
6FXC|1|BA|A|1626
6FXC|1|BA|G|1627

Current chains

Chain BA

23S ribosomal RNA

Nearby chains