IL_6FXC_237

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_237 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1771

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6FXC|1|BA|A|1883
6FXC|1|BA|G|1884
6FXC|1|BA|G|1885
6FXC|1|BA|A|1886
6FXC|1|BA|G|1887
*
6FXC|1|BA|C|1909
6FXC|1|BA|G|1910
6FXC|1|BA|A|1911
6FXC|1|BA|A|1912
6FXC|1|BA|U|1913

Current chains

Chain BA

23S ribosomal RNA

Nearby chains