IL_6FXC_243

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

6FXC|1|BA|G|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_243 not in the Motif Atlas

Homologous match to IL_7A0S_077

Geometric discrepancy: 0.1436

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6FXC|1|BA|U|2108
6FXC|1|BA|A|2109
6FXC|1|BA|G|2110
*
6FXC|1|BA|C|2263
6FXC|1|BA|G|2264
6FXC|1|BA|G|2265
6FXC|1|BA|G|2266

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BV

50S ribosomal protein L28