IL_6FXC_263

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

6FXC|1|BA|U|2716, 6FXC|1|BA|A|2717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_263 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.1288

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

6FXC|1|BA|U|2714
6FXC|1|BA|G|2715
6FXC|1|BA|U|2716
6FXC|1|BA|A|2717
6FXC|1|BA|C|2718
*
6FXC|1|BA|G|2745
6FXC|1|BA|G|2746
6FXC|1|BA|U|2747
6FXC|1|BA|A|2748
6FXC|1|BA|G|2749

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L17

Chain BN

50S ribosomal protein L19