IL_6FXC_265

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_265 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1313

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6FXC|1|BA|G|2764
6FXC|1|BA|A|2765
6FXC|1|BA|U|2766
6FXC|1|BA|A|2767
6FXC|1|BA|A|2768
6FXC|1|BA|G|2769
*
6FXC|1|BA|U|2789
6FXC|1|BA|G|2790
6FXC|1|BA|A|2791
6FXC|1|BA|A|2792
6FXC|1|BA|G|2793
6FXC|1|BA|C|2794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BH

50S ribosomal protein L13