IL_6FXC_283

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6FXC|1|Ba|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_283 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1335

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6FXC|1|Ba|G|147
6FXC|1|Ba|G|148
6FXC|1|Ba|A|149
6FXC|1|Ba|U|150
6FXC|1|Ba|A|151
6FXC|1|Ba|A|152
6FXC|1|Ba|C|153
*
6FXC|1|Ba|G|168
6FXC|1|Ba|C|169
6FXC|1|Ba|U|170
6FXC|1|Ba|A|171
6FXC|1|Ba|A|172
6FXC|1|Ba|U|173
6FXC|1|Ba|A|174
6FXC|1|Ba|C|175

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bt

30S ribosomal protein S20