IL_6FXC_284

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UUGA*UCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_284 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3887

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6FXC|1|Ba|U|187
6FXC|1|Ba|U|188
6FXC|1|Ba|G|189
6FXC|1|Ba|A|190
*
6FXC|1|Ba|U|201
6FXC|1|Ba|C|202
6FXC|1|Ba|A|203

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bt

30S ribosomal protein S20