IL_6FXC_316
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 6FXC|1|Ba|C|1065
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FXC_316 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.3916
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6FXC|1|Ba|G|1062
6FXC|1|Ba|U|1063
6FXC|1|Ba|G|1064
6FXC|1|Ba|C|1065
6FXC|1|Ba|A|1066
6FXC|1|Ba|U|1067
*
6FXC|1|Ba|A|1214
6FXC|1|Ba|U|1215
6FXC|1|Ba|G|1216
6FXC|1|Ba|C|1217
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain Bc
- 30S ribosomal protein S3
- Chain Bj
- 30S ribosomal protein S10
- Chain Bn
- 30S ribosomal protein S14 type Z
- Chain Bv
- Ribosome hibernation promotion factor
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