IL_6FXC_317

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

6FXC|1|Ba|C|1210, 6FXC|1|Ba|A|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_317 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1526

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6FXC|1|Ba|G|1068
6FXC|1|Ba|G|1069
*
6FXC|1|Ba|U|1209
6FXC|1|Ba|C|1210
6FXC|1|Ba|A|1211
6FXC|1|Ba|U|1212
6FXC|1|Ba|C|1213

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bc

30S ribosomal protein S3

Chain Bj

30S ribosomal protein S10

Chain Bn

30S ribosomal protein S14 type Z

Chain Bv

Ribosome hibernation promotion factor