IL_6FXC_318
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- UG*CAA
- Length
- 5 nucleotides
- Bulged bases
- 6FXC|1|Ba|A|1206
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FXC_318 not in the Motif Atlas
- Homologous match to IL_4LFB_046
- Geometric discrepancy: 0.1353
- The information below is about IL_4LFB_046
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
6FXC|1|Ba|U|1071
6FXC|1|Ba|G|1072
*
6FXC|1|Ba|C|1205
6FXC|1|Ba|A|1206
6FXC|1|Ba|A|1207
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain Bc
- 30S ribosomal protein S3
- Chain Be
- 30S ribosomal protein S5
- Chain Bj
- 30S ribosomal protein S10
- Chain Bn
- 30S ribosomal protein S14 type Z
- Chain Bv
- Ribosome hibernation promotion factor
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