IL_6FXC_362
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- AAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 6FXC|1|Ba|A|673
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FXC_362 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.1098
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6FXC|1|Ba|A|670
6FXC|1|Ba|A|671
6FXC|1|Ba|G|672
6FXC|1|Ba|A|673
6FXC|1|Ba|G|674
*
6FXC|1|Ba|U|748
6FXC|1|Ba|G|749
6FXC|1|Ba|G|750
6FXC|1|Ba|U|751
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bf
- 30S ribosomal protein S6
- Chain Bo
- 30S ribosomal protein S15
- Chain Br
- 30S ribosomal protein S18
- Chain Bu
- 30S ribosomal protein S21
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