IL_6FXC_363
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FXC_363 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.0918
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
6FXC|1|Ba|G|681
6FXC|1|Ba|G|682
6FXC|1|Ba|A|683
6FXC|1|Ba|A|684
6FXC|1|Ba|U|685
*
6FXC|1|Ba|G|721
6FXC|1|Ba|G|722
6FXC|1|Ba|A|723
6FXC|1|Ba|A|724
6FXC|1|Ba|C|725
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L2
- Chain Bf
- 30S ribosomal protein S6
- Chain Bk
- 30S ribosomal protein S11
- Chain Br
- 30S ribosomal protein S18
- Chain Bu
- 30S ribosomal protein S21
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