IL_6FYX_035
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6FYX|1|2|A|578, 6FYX|1|2|U|580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYX_035 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.0928
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FYX|1|2|G|561
6FYX|1|2|U|562
6FYX|1|2|G|563
6FYX|1|2|C|564
6FYX|1|2|C|565
6FYX|1|2|A|566
6FYX|1|2|G|567
*
6FYX|1|2|C|574
6FYX|1|2|G|575
6FYX|1|2|G|576
6FYX|1|2|U|577
6FYX|1|2|A|578
6FYX|1|2|A|579
6FYX|1|2|U|580
6FYX|1|2|U|581
6FYX|1|2|C|582
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (31-MER)
- Chain D
- KLLA0D08305p
- Chain X
- KLLA0B11231p
- Chain e
- 40S ribosomal protein S30
- Chain i
- Eukaryotic translation initiation factor 1A
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