IL_6FYX_047
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 6FYX|1|2|G|875
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYX_047 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.1321
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6FYX|1|2|C|873
6FYX|1|2|G|874
6FYX|1|2|G|875
6FYX|1|2|G|876
6FYX|1|2|G|877
*
6FYX|1|2|C|949
6FYX|1|2|A|950
6FYX|1|2|A|951
6FYX|1|2|G|952
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S1
- Chain N
- KLLA0F18040p
- Chain a
- 40S ribosomal protein S26
- Chain q
- eIF3c,eIF3c
Coloring options: