IL_6FYX_111
3D structure
- PDB id
- 6FYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6FYX|1|2|G|1227
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYX_111 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2661
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06668.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6FYX|1|2|A|1223
6FYX|1|2|U|1224
6FYX|1|2|A|1225
6FYX|1|2|A|1226
6FYX|1|2|G|1227
6FYX|1|2|G|1228
6FYX|1|2|A|1229
6FYX|1|2|U|1230
6FYX|1|2|U|1231
6FYX|1|2|G|1232
*
6FYX|1|2|C|1251
6FYX|1|2|U|1252
6FYX|1|2|U|1253
6FYX|1|2|G|1254
6FYX|1|2|A|1255
6FYX|1|2|U|1256
6FYX|1|2|U|1257
6FYX|1|2|U|1258
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- KLLA0B08173p
- Chain M
- 40S ribosomal protein S12
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
Coloring options: