3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
UAUCAA*UUUCAACG
Length
14 nucleotides
Bulged bases
6FYY|1|2|U|312, 6FYY|1|2|C|350
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FYY_020 not in the Motif Atlas
Homologous match to IL_4V88_402
Geometric discrepancy: 0.1012
The information below is about IL_4V88_402
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

6FYY|1|2|U|310
6FYY|1|2|A|311
6FYY|1|2|U|312
6FYY|1|2|C|313
6FYY|1|2|A|314
6FYY|1|2|A|315
*
6FYY|1|2|U|347
6FYY|1|2|U|348
6FYY|1|2|U|349
6FYY|1|2|C|350
6FYY|1|2|A|351
6FYY|1|2|A|352
6FYY|1|2|C|353
6FYY|1|2|G|354

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain I
40S ribosomal protein S8
Chain L
KLLA0A10483p
Chain X
KLLA0B11231p
Chain q
eIF3c,Eukaryotic translation initiation factor 3 subunit C

Coloring options:


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