IL_6FYY_028

3D structure

PDB id

6FYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAUAC*GUAAUU

Length

11 nucleotides

Bulged bases

6FYY|1|2|A|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FYY_028 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3569

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6FYY|1|2|G|479
6FYY|1|2|A|480
6FYY|1|2|U|481
6FYY|1|2|A|482
6FYY|1|2|C|483
*
6FYY|1|2|G|502
6FYY|1|2|U|503
6FYY|1|2|A|504
6FYY|1|2|A|505
6FYY|1|2|U|506
6FYY|1|2|U|507

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain e

40S ribosomal protein S30

Chain p

Eukaryotic translation initiation factor 3 subunit B