3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
UUC*GA
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FYY_046 not in the Motif Atlas
Geometric match to IL_4V83_236
Geometric discrepancy: 0.342
The information below is about IL_4V83_236
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

6FYY|1|2|U|887
6FYY|1|2|U|888
6FYY|1|2|C|889
*
6FYY|1|2|G|921
6FYY|1|2|A|922

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain B
40S ribosomal protein S1
Chain O
40S ribosomal protein S14

Coloring options:


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