IL_6FYY_065
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 6FYY|1|2|U|1430, 6FYY|1|2|G|1433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FYY_065 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.108
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6FYY|1|2|U|1275
6FYY|1|2|G|1276
6FYY|1|2|G|1277
*
6FYY|1|2|U|1428
6FYY|1|2|C|1429
6FYY|1|2|U|1430
6FYY|1|2|G|1431
6FYY|1|2|U|1432
6FYY|1|2|G|1433
6FYY|1|2|A|1434
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- KLLA0D08305p
- Chain K
- KLLA0B08173p
- Chain U
- KLLA0F25542p
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
- Chain i
- Eukaryotic translation initiation factor 1A
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