IL_6G5H_049

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6G5H|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5H_049 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.1622

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6G5H|1|2|C|931
6G5H|1|2|G|932
6G5H|1|2|G|933
6G5H|1|2|G|934
6G5H|1|2|G|935
*
6G5H|1|2|C|1007
6G5H|1|2|A|1008
6G5H|1|2|A|1009
6G5H|1|2|G|1010

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain N

40S ribosomal protein S13

Chain a

40S ribosomal protein S26