IL_6G5H_073
3D structure
- PDB id
- 6G5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 6G5H|1|2|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6G5H_073 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3353
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6G5H|1|2|C|1395
6G5H|1|2|A|1396
6G5H|1|2|U|1397
6G5H|1|2|G|1398
6G5H|1|2|C|1399
*
6G5H|1|2|G|1447
6G5H|1|2|A|1448
6G5H|1|2|G|1449
6G5H|1|2|G|1450
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S16
- Chain R
- 40S ribosomal protein S17
- Chain U
- 40S ribosomal protein S20
- Chain g
- Receptor of activated protein C kinase 1
Coloring options: