IL_6G5I_035

3D structure

PDB id

6G5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State R

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6G5I|1|2|A|628, 6G5I|1|2|U|630, 6G5I|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6G5I_035 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1718

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6G5I|1|2|G|611
6G5I|1|2|U|612
6G5I|1|2|G|613
6G5I|1|2|C|614
6G5I|1|2|C|615
6G5I|1|2|A|616
6G5I|1|2|G|617
*
6G5I|1|2|C|624
6G5I|1|2|G|625
6G5I|1|2|G|626
6G5I|1|2|U|627
6G5I|1|2|A|628
6G5I|1|2|A|629
6G5I|1|2|U|630
6G5I|1|2|U|631
6G5I|1|2|C|632

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30