IL_6GAW_033
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAA*UAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAW_033 not in the Motif Atlas
- Geometric match to IL_1SA9_002
- Geometric discrepancy: 0.2319
- The information below is about IL_1SA9_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.3
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 47
Unit IDs
6GAW|1|AA|C|629
6GAW|1|AA|A|630
6GAW|1|AA|A|631
6GAW|1|AA|A|632
*
6GAW|1|AA|U|652
6GAW|1|AA|A|653
6GAW|1|AA|A|654
6GAW|1|AA|G|655
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AB
- Mitochondrial ribosomal protein S2
- Chain AC
- Mitochondrial ribosomal protein S24
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AI
- 28S ribosomal protein S9, mitochondrial
- Chain Ak
- 28S ribosomal protein S35, mitochondrial
Coloring options: