IL_6GAW_062

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

6GAW|1|BA|A|479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_062 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.1828

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6GAW|1|BA|G|478
6GAW|1|BA|A|479
6GAW|1|BA|G|480
*
6GAW|1|BA|C|588
6GAW|1|BA|C|589

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B3

uL30m

Chain BU

Mitochondrial ribosomal protein L20

Chain BV

Mitochondrial ribosomal protein L21

Chain BW

uL22m

Chain Bg

mL43

Chain Bo

39S ribosomal protein L52, mitochondrial