IL_6GAZ_015
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUCAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6GAZ|1|AA|C|258, 6GAZ|1|AA|U|260, 6GAZ|1|AA|A|261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAZ_015 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2576
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GAZ|1|AA|G|241
6GAZ|1|AA|U|242
6GAZ|1|AA|G|243
6GAZ|1|AA|C|244
6GAZ|1|AA|C|245
6GAZ|1|AA|A|246
6GAZ|1|AA|G|247
*
6GAZ|1|AA|C|254
6GAZ|1|AA|G|255
6GAZ|1|AA|G|256
6GAZ|1|AA|U|257
6GAZ|1|AA|C|258
6GAZ|1|AA|A|259
6GAZ|1|AA|U|260
6GAZ|1|AA|A|261
6GAZ|1|AA|C|262
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain AX
- MT-CO3 mRNA, mitochondrial
- Chain Ai
- Mitochondrial ribosomal protein S33
- Chain BC
- Translation initiation factor IF-2, mitochondrial
Coloring options: