IL_6GB2_001

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_001 not in the Motif Atlas

Geometric match to IL_2R8S_001

Geometric discrepancy: 0.1291

The information below is about IL_2R8S_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6GB2|1|AV|A|4
6GB2|1|AV|A|5
6GB2|1|AV|G|6
*
6GB2|1|AV|C|62
6GB2|1|AV|G|63
6GB2|1|AV|U|64

Current chains

Chain AV

P-site fMet-tRNAMet, mitochondrial

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

Translation initiation factor IF-2, mitochondrial