IL_6GB2_012

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

6GB2|1|BA|G|348, 6GB2|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_012 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1344

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6GB2|1|BA|G|242
6GB2|1|BA|A|243
6GB2|1|BA|A|244
6GB2|1|BA|A|245
6GB2|1|BA|C|246
*
6GB2|1|BA|G|346
6GB2|1|BA|U|347
6GB2|1|BA|G|348
6GB2|1|BA|A|349
6GB2|1|BA|U|350
6GB2|1|BA|A|351
6GB2|1|BA|G|352
6GB2|1|BA|C|353

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

Mitochondrial ribosomal protein L15

Chain Bn

Mitochondrial ribosomal protein L51