IL_6GB2_013

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_013 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1336

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6GB2|1|BA|G|249
6GB2|1|BA|A|250
6GB2|1|BA|C|251
*
6GB2|1|BA|G|341
6GB2|1|BA|C|342
6GB2|1|BA|C|343

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B7

Mitochondrial ribosomal protein L34

Chain BF

Mitochondrial ribosomal protein L4