IL_6GB2_021

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAG*CAUC

Length

8 nucleotides

Bulged bases

6GB2|1|BA|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_021 not in the Motif Atlas

Geometric match to IL_5D8H_002

Geometric discrepancy: 0.1588

The information below is about IL_5D8H_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6GB2|1|BA|G|504
6GB2|1|BA|U|505
6GB2|1|BA|A|506
6GB2|1|BA|G|507
*
6GB2|1|BA|C|521
6GB2|1|BA|A|522
6GB2|1|BA|U|523
6GB2|1|BA|C|524

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BK

Mitochondrial ribosomal protein L11

Chain BQ

Mitochondrial ribosomal protein L16

Chain Bq

Uncharacterized protein